J5_7M4Y_009

3D structure

PDB id

7M4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

7M4Y|1|a|A|105, 7M4Y|1|a|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7M4Y_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0987

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.2

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

7M4Y|1|a|C|60
7M4Y|1|a|A|61
7M4Y|1|a|A|62
7M4Y|1|a|G|63
*
7M4Y|1|a|C|102
7M4Y|1|a|G|103
7M4Y|1|a|G|104
7M4Y|1|a|A|105
7M4Y|1|a|C|106
7M4Y|1|a|G|107
7M4Y|1|a|G|108
7M4Y|1|a|G|109
*
7M4Y|1|a|C|310
7M4Y|1|a|A|311
7M4Y|1|a|C|312
*
7M4Y|1|a|G|333
7M4Y|1|a|A|334
7M4Y|1|a|C|335
*
7M4Y|1|a|G|346
7M4Y|1|a|G|347
7M4Y|1|a|C|348
7M4Y|1|a|A|349
7M4Y|1|a|G|350

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20