J5_7MD7_001

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

7MD7|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7MD7_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0506

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7MD7|1|1A|C|47
7MD7|1|1A|G|48
7MD7|1|1A|A|49
7MD7|1|1A|U|50
7MD7|1|1A|G|51
7MD7|1|1A|A|52
7MD7|1|1A|A|53
7MD7|1|1A|G|54
*
7MD7|1|1A|C|116
7MD7|1|1A|G|117
7MD7|1|1A|A|118
7MD7|1|1A|A|119
7MD7|1|1A|U|120
7MD7|1|1A|G|121
*
7MD7|1|1A|C|130
7MD7|1|1A|G|131
*
7MD7|1|1A|C|148
7MD7|1|1A|A|149
7MD7|1|1A|C|150
*
7MD7|1|1A|G|176
7MD7|1|1A|G|177
7MD7|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23