3D structure

PDB id
7MPI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from cbf5-D95A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.05 Å

Loop

Sequence
AGG*CGAUGAAG*UGAACG*CG*CAU
Length
22 nucleotides
Bulged bases
7MPI|1|A4|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7MPI_001 not in the Motif Atlas
Homologous match to J5_8P9A_010
Geometric discrepancy: 0.0619
The information below is about J5_8P9A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

7MPI|1|A1|A|20
7MPI|1|A1|G|21
7MPI|1|A1|G|22
*
7MPI|1|A4|C|35
7MPI|1|A4|G|36
7MPI|1|A4|A|37
7MPI|1|A4|U|38
7MPI|1|A4|G|39
7MPI|1|A4|A|40
7MPI|1|A4|A|41
7MPI|1|A4|G|42
*
7MPI|1|A4|U|102
7MPI|1|A4|G|103
7MPI|1|A4|A|104
7MPI|1|A4|A|105
7MPI|1|A4|C|106
7MPI|1|A4|G|107
*
7MPI|1|A4|C|115
7MPI|1|A4|G|116
*
7MPI|1|A4|C|137
7MPI|1|A4|A|138
7MPI|1|A4|U|139

Current chains

Chain A1
25S rRNA
Chain A4
5.8 S rRNA

Nearby chains

Chain AN
60S ribosomal protein L15-A
Chain AX
60S ribosomal protein L25
Chain Ah
60S ribosomal protein L35-A
Chain Aj
60S ribosomal protein L37-A
Chain Al
60S ribosomal protein L39

Coloring options:


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