J5_7MPI_008
3D structure
- PDB id
- 7MPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7MPI|1|B5|U|56, 7MPI|1|B5|A|93, 7MPI|1|B5|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7MPI_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0659
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7MPI|1|B5|C|54
7MPI|1|B5|A|55
7MPI|1|B5|U|56
7MPI|1|B5|G|57
*
7MPI|1|B5|C|90
7MPI|1|B5|G|91
7MPI|1|B5|A|92
7MPI|1|B5|A|93
7MPI|1|B5|U|94
7MPI|1|B5|G|95
7MPI|1|B5|G|96
7MPI|1|B5|C|97
*
7MPI|1|B5|G|386
7MPI|1|B5|A|387
7MPI|1|B5|G|388
*
7MPI|1|B5|C|409
7MPI|1|B5|A|410
7MPI|1|B5|C|411
*
7MPI|1|B5|G|422
7MPI|1|B5|G|423
7MPI|1|B5|C|424
7MPI|1|B5|A|425
7MPI|1|B5|G|426
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AV
- 60S ribosomal protein L23-A
- Chain BE
- 40S ribosomal protein S4-A
- Chain BG
- 40S ribosomal protein S6-A
- Chain BI
- 40S ribosomal protein S8-A
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BY
- 40S ribosomal protein S24-A
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