J5_7MSM_011

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

7MSM|1|a|A|63, 7MSM|1|a|A|104, 7MSM|1|a|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7MSM_011 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0939

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7MSM|1|a|C|61
7MSM|1|a|A|62
7MSM|1|a|A|63
7MSM|1|a|G|64
*
7MSM|1|a|C|101
7MSM|1|a|G|102
7MSM|1|a|A|103
7MSM|1|a|A|104
7MSM|1|a|C|105
7MSM|1|a|G|106
7MSM|1|a|G|107
7MSM|1|a|G|108
*
7MSM|1|a|C|313
7MSM|1|a|A|314
7MSM|1|a|C|315
*
7MSM|1|a|G|336
7MSM|1|a|A|337
7MSM|1|a|C|338
*
7MSM|1|a|G|349
7MSM|1|a|G|350
7MSM|1|a|C|351
7MSM|1|a|A|352
7MSM|1|a|G|353

Current chains

Chain a

16S rRNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20