J5_7MT2_001

3D structure

PDB id

7MT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAC*GAG

Length

22 nucleotides

Bulged bases

7MT2|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7MT2_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0996

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7MT2|1|A|C|47
7MT2|1|A|G|48
7MT2|1|A|A|49
7MT2|1|A|U|50
7MT2|1|A|G|51
7MT2|1|A|A|52
7MT2|1|A|A|53
7MT2|1|A|G|54
*
7MT2|1|A|C|116
7MT2|1|A|G|117
7MT2|1|A|A|118
7MT2|1|A|A|119
7MT2|1|A|U|120
7MT2|1|A|G|121
*
7MT2|1|A|C|130
7MT2|1|A|A|131
*
7MT2|1|A|U|150
7MT2|1|A|A|151
7MT2|1|A|C|152
*
7MT2|1|A|G|178
7MT2|1|A|A|179
7MT2|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23