J5_7NAW_003

3D structure

PDB id

7NAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.05 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

7NAW|1|A|A|109, 7NAW|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7NAW_003 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.1492

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7NAW|1|A|C|58
7NAW|1|A|A|59
7NAW|1|A|A|60
7NAW|1|A|G|61
*
7NAW|1|A|C|106
7NAW|1|A|G|107
7NAW|1|A|G|108
7NAW|1|A|A|109
7NAW|1|A|C|110
7NAW|1|A|G|111
7NAW|1|A|G|112
7NAW|1|A|G|113
*
7NAW|1|A|C|314
7NAW|1|A|A|315
7NAW|1|A|C|316
*
7NAW|1|A|G|337
7NAW|1|A|A|338
7NAW|1|A|C|339
*
7NAW|1|A|G|350
7NAW|1|A|G|351
7NAW|1|A|C|352
7NAW|1|A|A|353
7NAW|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20