J5_7NBU_006

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

7NBU|1|a|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7NBU_006 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0567

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7NBU|1|a|C|584
7NBU|1|a|G|585
7NBU|1|a|A|586
7NBU|1|a|C|587
7NBU|1|a|U|588
7NBU|1|a|U|589
*
7NBU|1|a|A|668
7NBU|1|a|G|669
7NBU|1|a|A|670
7NBU|1|a|C|671
*
7NBU|1|a|G|809
7NBU|1|a|U|810
7NBU|1|a|U|811
7NBU|1|a|C|812
*
7NBU|1|a|G|1195
7NBU|1|a|C|1196
*
7NBU|1|a|G|1250
7NBU|1|a|C|1251
7NBU|1|a|G|1252
7NBU|1|a|A|1253
7NBU|1|a|A|1254
7NBU|1|a|U|1255
7NBU|1|a|G|1256

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21