J5_7NBU_009

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

7NBU|1|a|U|2076, 7NBU|1|a|G|2428, 7NBU|1|a|G|2429, 7NBU|1|a|A|2430, 7NBU|1|a|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7NBU_009 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.0863

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7NBU|1|a|U|2074
7NBU|1|a|U|2075
7NBU|1|a|U|2076
7NBU|1|a|A|2077
*
7NBU|1|a|U|2243
7NBU|1|a|U|2244
7NBU|1|a|U|2245
7NBU|1|a|G|2246
*
7NBU|1|a|C|2258
7NBU|1|a|U|2259
*
7NBU|1|a|A|2281
7NBU|1|a|G|2282
*
7NBU|1|a|C|2427
7NBU|1|a|G|2428
7NBU|1|a|G|2429
7NBU|1|a|A|2430
7NBU|1|a|U|2431
7NBU|1|a|A|2432
7NBU|1|a|A|2433
7NBU|1|a|A|2434
7NBU|1|a|A|2435

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L33

Chain 2

50S ribosomal protein L35

Chain W

E-site tRNA

Chain c

50S ribosomal protein L2

Chain k

50S ribosomal protein L15

Chain v

50S ribosomal protein L27

Chain w

50S ribosomal protein L28