J5_7NHN_003
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAG*CGUGC*GAA*UA*UA
- Length
- 15 nucleotides
- Bulged bases
- 7NHN|1|A|A|577, 7NHN|1|A|U|605
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NHN_003 not in the Motif Atlas
- Homologous match to J5_4WF9_003
- Geometric discrepancy: 0.083
- The information below is about J5_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NHN|1|A|U|576
7NHN|1|A|A|577
7NHN|1|A|G|578
*
7NHN|1|A|C|603
7NHN|1|A|G|604
7NHN|1|A|U|605
7NHN|1|A|G|606
7NHN|1|A|C|607
*
7NHN|1|A|G|620
7NHN|1|A|A|621
7NHN|1|A|A|622
*
7NHN|1|A|U|1306
7NHN|1|A|A|1307
*
7NHN|1|A|U|2050
7NHN|1|A|A|2051
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32-2
- Chain I
- 50S ribosomal protein L4
- Chain M
- 50S ribosomal protein L13
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
- Chain V
- 50S ribosomal protein L22
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