J5_7NHN_005
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7NHN|1|A|G|1791, 7NHN|1|A|G|1796
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NHN_005 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.0862
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
7NHN|1|A|G|1723
7NHN|1|A|C|1724
7NHN|1|A|A|1725
7NHN|1|A|A|1726
7NHN|1|A|A|1727
7NHN|1|A|A|1728
7NHN|1|A|U|1729
7NHN|1|A|G|1730
7NHN|1|A|A|1731
*
7NHN|1|A|U|1755
7NHN|1|A|G|1756
*
7NHN|1|A|C|1784
7NHN|1|A|C|1785
*
7NHN|1|A|G|1789
7NHN|1|A|U|1790
7NHN|1|A|G|1791
7NHN|1|A|A|1792
7NHN|1|A|A|1793
7NHN|1|A|U|1794
7NHN|1|A|A|1795
7NHN|1|A|G|1796
7NHN|1|A|G|1797
*
7NHN|1|A|C|2021
7NHN|1|A|A|2022
7NHN|1|A|C|2023
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain H
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L14
- Chain S
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: