J5_7NHN_007
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7NHN|1|A|U|2109, 7NHN|1|A|G|2461, 7NHN|1|A|G|2462, 7NHN|1|A|A|2463, 7NHN|1|A|U|2464
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NHN_007 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1388
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7NHN|1|A|U|2107
7NHN|1|A|U|2108
7NHN|1|A|U|2109
7NHN|1|A|A|2110
*
7NHN|1|A|U|2276
7NHN|1|A|U|2277
7NHN|1|A|U|2278
7NHN|1|A|G|2279
*
7NHN|1|A|C|2291
7NHN|1|A|G|2292
*
7NHN|1|A|C|2314
7NHN|1|A|G|2315
*
7NHN|1|A|C|2460
7NHN|1|A|G|2461
7NHN|1|A|G|2462
7NHN|1|A|A|2463
7NHN|1|A|U|2464
7NHN|1|A|A|2465
7NHN|1|A|A|2466
7NHN|1|A|A|2467
7NHN|1|A|A|2468
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- Lmo0919 protein
- Chain 1
- 50S ribosomal protein L28
- Chain 8
- 50S ribosomal protein L35
- Chain G
- 50S ribosomal protein L2
- Chain O
- 50S ribosomal protein L15
- Chain Z
- 50S ribosomal protein L27
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