J5_7NRC_007
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 7NRC|1|S2|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NRC_007 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1118
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7NRC|1|S2|C|31
7NRC|1|S2|U|32
7NRC|1|S2|U|33
7NRC|1|S2|G|34
7NRC|1|S2|U|35
*
7NRC|1|S2|A|473
7NRC|1|S2|A|474
7NRC|1|S2|A|475
7NRC|1|S2|U|476
7NRC|1|S2|A|477
7NRC|1|S2|A|478
7NRC|1|S2|C|479
*
7NRC|1|S2|G|509
7NRC|1|S2|G|510
7NRC|1|S2|A|511
7NRC|1|S2|A|512
7NRC|1|S2|U|513
7NRC|1|S2|G|514
*
7NRC|1|S2|C|543
7NRC|1|S2|A|544
7NRC|1|S2|A|545
7NRC|1|S2|U|546
*
7NRC|1|S2|A|592
7NRC|1|S2|U|593
7NRC|1|S2|A|594
7NRC|1|S2|G|595
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sg
- 40S ribosomal protein S30-A
Coloring options: