J5_7NRD_001
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 7NRD|1|LC|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NRD_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1457
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
7NRD|1|LA|A|20
7NRD|1|LA|G|21
7NRD|1|LA|G|22
*
7NRD|1|LC|C|35
7NRD|1|LC|G|36
7NRD|1|LC|A|37
7NRD|1|LC|U|38
7NRD|1|LC|G|39
7NRD|1|LC|A|40
7NRD|1|LC|A|41
7NRD|1|LC|G|42
*
7NRD|1|LC|U|102
7NRD|1|LC|G|103
7NRD|1|LC|A|104
7NRD|1|LC|A|105
7NRD|1|LC|C|106
7NRD|1|LC|G|107
*
7NRD|1|LC|C|115
7NRD|1|LC|G|116
*
7NRD|1|LC|C|137
7NRD|1|LC|A|138
7NRD|1|LC|U|139
Current chains
- Chain LA
- 25S rRNA (3184-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LP
- 60S ribosomal protein L15-A
- Chain LZ
- 60S ribosomal protein L25
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
Coloring options: