J5_7NRD_008
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7NRD|1|S2|A|93, 7NRD|1|S2|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NRD_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1143
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NRD|1|S2|C|54
7NRD|1|S2|A|55
7NRD|1|S2|U|56
7NRD|1|S2|G|57
*
7NRD|1|S2|C|90
7NRD|1|S2|G|91
7NRD|1|S2|A|92
7NRD|1|S2|A|93
7NRD|1|S2|U|94
7NRD|1|S2|G|95
7NRD|1|S2|G|96
7NRD|1|S2|C|97
*
7NRD|1|S2|G|386
7NRD|1|S2|A|387
7NRD|1|S2|G|388
*
7NRD|1|S2|C|409
7NRD|1|S2|A|410
7NRD|1|S2|C|411
*
7NRD|1|S2|G|422
7NRD|1|S2|G|423
7NRD|1|S2|C|424
7NRD|1|S2|A|425
7NRD|1|S2|G|426
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain LX
- 60S ribosomal protein L23-A
- Chain SS
- 40S ribosomal protein S4-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain SV
- 40S ribosomal protein S8-A
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sd
- 40S ribosomal protein S24-A
Coloring options: