J5_7NWH_006
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 7NWH|1|9|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NWH_006 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.168
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7NWH|1|9|C|30
7NWH|1|9|U|31
7NWH|1|9|U|32
7NWH|1|9|G|33
7NWH|1|9|U|34
*
7NWH|1|9|A|521
7NWH|1|9|A|522
7NWH|1|9|A|523
7NWH|1|9|U|524
7NWH|1|9|A|525
7NWH|1|9|A|526
7NWH|1|9|C|527
*
7NWH|1|9|G|558
7NWH|1|9|G|559
7NWH|1|9|A|560
7NWH|1|9|A|561
7NWH|1|9|U|562
7NWH|1|9|G|563
*
7NWH|1|9|C|592
7NWH|1|9|C|593
7NWH|1|9|A|594
7NWH|1|9|U|595
*
7NWH|1|9|A|641
7NWH|1|9|U|642
7NWH|1|9|A|643
7NWH|1|9|G|644
Current chains
- Chain 9
- 18S Ribosomal RNA
Nearby chains
- Chain JJ
- 40S ribosomal protein S9
- Chain XX
- 40S ribosomal protein uS12
- Chain ee
- 40S ribosomal protein S30
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