J5_7O19_007

3D structure

PDB id

7O19 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7O19|1|BA|U|1758, 7O19|1|BA|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7O19_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0661

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7O19|1|BA|G|1674
7O19|1|BA|C|1675
7O19|1|BA|A|1676
7O19|1|BA|A|1677
7O19|1|BA|A|1678
7O19|1|BA|A|1679
7O19|1|BA|U|1680
7O19|1|BA|G|1681
7O19|1|BA|G|1682
*
7O19|1|BA|C|1706
7O19|1|BA|G|1707
*
7O19|1|BA|U|1751
7O19|1|BA|C|1752
*
7O19|1|BA|G|1756
7O19|1|BA|A|1757
7O19|1|BA|U|1758
7O19|1|BA|A|1759
7O19|1|BA|C|1760
7O19|1|BA|C|1761
7O19|1|BA|A|1762
7O19|1|BA|G|1763
7O19|1|BA|C|1764
*
7O19|1|BA|G|1988
7O19|1|BA|G|1989
7O19|1|BA|C|1990

Current chains

Chain BA

Ribosomal RNA 23S

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14

Chain BP

50S ribosomal protein L19