J5_7O5B_002
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7O5B|1|A|A|107, 7O5B|1|A|C|360
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7O5B_002 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1084
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.2
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7O5B|1|A|C|60
7O5B|1|A|A|61
7O5B|1|A|A|62
7O5B|1|A|G|63
*
7O5B|1|A|C|104
7O5B|1|A|G|105
7O5B|1|A|G|106
7O5B|1|A|A|107
7O5B|1|A|C|108
7O5B|1|A|G|109
7O5B|1|A|G|110
7O5B|1|A|G|111
*
7O5B|1|A|C|322
7O5B|1|A|A|323
7O5B|1|A|C|324
*
7O5B|1|A|G|345
7O5B|1|A|A|346
7O5B|1|A|C|347
*
7O5B|1|A|G|358
7O5B|1|A|G|359
7O5B|1|A|C|360
7O5B|1|A|A|361
7O5B|1|A|G|362
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
- Chain f
- 50S ribosomal protein L14
- Chain m
- 50S ribosomal protein L19
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