J5_7O5B_005
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UAG*CGUGC*GAA*UA*UA
- Length
- 15 nucleotides
- Bulged bases
- 7O5B|1|X|A|578, 7O5B|1|X|U|606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7O5B_005 not in the Motif Atlas
- Homologous match to J5_4WF9_003
- Geometric discrepancy: 0.0879
- The information below is about J5_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7O5B|1|X|U|577
7O5B|1|X|A|578
7O5B|1|X|G|579
*
7O5B|1|X|C|604
7O5B|1|X|G|605
7O5B|1|X|U|606
7O5B|1|X|G|607
7O5B|1|X|C|608
*
7O5B|1|X|G|621
7O5B|1|X|A|622
7O5B|1|X|A|623
*
7O5B|1|X|U|1301
7O5B|1|X|A|1302
*
7O5B|1|X|U|2046
7O5B|1|X|A|2047
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain b
- 50S ribosomal protein L4
- Chain i
- 50S ribosomal protein L15
- Chain n
- 50S ribosomal protein L20
- Chain o
- 50S ribosomal protein L21
- Chain r
- 50S ribosomal protein L22
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