J5_7O5B_007
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7O5B|1|X|G|1787, 7O5B|1|X|G|1792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7O5B_007 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.1103
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
7O5B|1|X|G|1719
7O5B|1|X|C|1720
7O5B|1|X|A|1721
7O5B|1|X|A|1722
7O5B|1|X|A|1723
7O5B|1|X|A|1724
7O5B|1|X|U|1725
7O5B|1|X|G|1726
7O5B|1|X|A|1727
*
7O5B|1|X|U|1751
7O5B|1|X|G|1752
*
7O5B|1|X|C|1780
7O5B|1|X|C|1781
*
7O5B|1|X|G|1785
7O5B|1|X|U|1786
7O5B|1|X|G|1787
7O5B|1|X|A|1788
7O5B|1|X|A|1789
7O5B|1|X|U|1790
7O5B|1|X|A|1791
7O5B|1|X|G|1792
7O5B|1|X|G|1793
*
7O5B|1|X|C|2017
7O5B|1|X|A|2018
7O5B|1|X|C|2019
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain a
- 50S ribosomal protein L3
- Chain f
- 50S ribosomal protein L14
- Chain m
- 50S ribosomal protein L19
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