J5_7O5B_009
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7O5B|1|X|U|2105, 7O5B|1|X|G|2457, 7O5B|1|X|G|2458, 7O5B|1|X|A|2459, 7O5B|1|X|U|2460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7O5B_009 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0893
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7O5B|1|X|U|2103
7O5B|1|X|U|2104
7O5B|1|X|U|2105
7O5B|1|X|A|2106
*
7O5B|1|X|U|2272
7O5B|1|X|U|2273
7O5B|1|X|U|2274
7O5B|1|X|G|2275
*
7O5B|1|X|C|2287
7O5B|1|X|G|2288
*
7O5B|1|X|C|2310
7O5B|1|X|G|2311
*
7O5B|1|X|C|2456
7O5B|1|X|G|2457
7O5B|1|X|G|2458
7O5B|1|X|A|2459
7O5B|1|X|U|2460
7O5B|1|X|A|2461
7O5B|1|X|A|2462
7O5B|1|X|A|2463
7O5B|1|X|A|2464
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain Z
- 50S ribosomal protein L2
- Chain i
- 50S ribosomal protein L15
- Chain u
- 50S ribosomal protein L27
- Chain v
- 50S ribosomal protein L28
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