J5_7O7Y_001
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 7O7Y|1|A2|C|594
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7O7Y_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1204
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7O7Y|1|A2|C|30
7O7Y|1|A2|U|31
7O7Y|1|A2|U|32
7O7Y|1|A2|G|33
7O7Y|1|A2|PSU|34
*
7O7Y|1|A2|A|522
7O7Y|1|A2|A|523
7O7Y|1|A2|A|524
7O7Y|1|A2|U|525
7O7Y|1|A2|A|526
7O7Y|1|A2|A|527
7O7Y|1|A2|C|528
*
7O7Y|1|A2|G|559
7O7Y|1|A2|G|560
7O7Y|1|A2|A|561
7O7Y|1|A2|A|562
7O7Y|1|A2|U|563
7O7Y|1|A2|G|564
*
7O7Y|1|A2|C|593
7O7Y|1|A2|C|594
7O7Y|1|A2|A|595
7O7Y|1|A2|U|596
*
7O7Y|1|A2|A|642
7O7Y|1|A2|U|643
7O7Y|1|A2|A|644
7O7Y|1|A2|OMG|645
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AD
- 40S ribosomal protein S30
- Chain Ai
- Ribosomal protein S9 (Predicted)
- Chain Aw
- 40S ribosomal protein S23
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