J5_7O7Z_001

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

26 nucleotides

Bulged bases

7O7Z|1|A2|C|594

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7O7Z_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1234

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7O7Z|1|A2|C|30
7O7Z|1|A2|U|31
7O7Z|1|A2|U|32
7O7Z|1|A2|G|33
7O7Z|1|A2|PSU|34
*
7O7Z|1|A2|A|522
7O7Z|1|A2|A|523
7O7Z|1|A2|A|524
7O7Z|1|A2|U|525
7O7Z|1|A2|A|526
7O7Z|1|A2|A|527
7O7Z|1|A2|C|528
*
7O7Z|1|A2|G|559
7O7Z|1|A2|G|560
7O7Z|1|A2|A|561
7O7Z|1|A2|A|562
7O7Z|1|A2|U|563
7O7Z|1|A2|G|564
*
7O7Z|1|A2|C|593
7O7Z|1|A2|C|594
7O7Z|1|A2|A|595
7O7Z|1|A2|U|596
*
7O7Z|1|A2|A|642
7O7Z|1|A2|U|643
7O7Z|1|A2|A|644
7O7Z|1|A2|OMG|645

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Aw

40S ribosomal protein S23