J5_7O80_003
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7O80|1|A2|U|55, 7O80|1|A2|A|92, 7O80|1|A2|C|473
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7O80_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1167
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7O80|1|A2|C|53
7O80|1|A2|A|54
7O80|1|A2|U|55
7O80|1|A2|G|56
*
7O80|1|A2|C|89
7O80|1|A2|G|90
7O80|1|A2|A|91
7O80|1|A2|A|92
7O80|1|A2|PSU|93
7O80|1|A2|G|94
7O80|1|A2|G|95
7O80|1|A2|C|96
*
7O80|1|A2|G|435
7O80|1|A2|A|436
7O80|1|A2|OMG|437
*
7O80|1|A2|C|458
7O80|1|A2|A|459
7O80|1|A2|C|460
*
7O80|1|A2|G|471
7O80|1|A2|G|472
7O80|1|A2|C|473
7O80|1|A2|A|474
7O80|1|A2|G|475
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- Ribosomal protein eS4
- Chain Af
- 40S ribosomal protein S6
- Chain Ah
- 40S ribosomal protein S8
- Chain Ai
- Ribosomal protein S9 (Predicted)
- Chain Ax
- 40S ribosomal protein S24
- Chain BV
- Ribosomal protein L23
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