J5_7ODE_002
3D structure
- PDB id
- 7ODE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome LiCl core particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 7ODE|1|I|A|532, 7ODE|1|I|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ODE_002 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.1464
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7ODE|1|I|C|531
7ODE|1|I|A|532
7ODE|1|I|G|533
*
7ODE|1|I|C|560
7ODE|1|I|G|561
7ODE|1|I|U|562
7ODE|1|I|A|563
7ODE|1|I|C|564
*
7ODE|1|I|G|577
7ODE|1|I|G|578
7ODE|1|I|G|579
*
7ODE|1|I|C|1261
7ODE|1|I|A|1262
*
7ODE|1|I|U|2017
7ODE|1|I|G|2018
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L20
- Chain Z
- 50S ribosomal protein L21
- Chain a
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
Coloring options: