J5_7OIE_001
3D structure
- PDB id
- 7OIE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAA*UAUAC*GAA*UA*UG
- Length
- 15 nucleotides
- Bulged bases
- 7OIE|1|A|A|158, 7OIE|1|A|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OIE_001 not in the Motif Atlas
- Homologous match to J5_7A0S_003
- Geometric discrepancy: 0.1229
- The information below is about J5_7A0S_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7OIE|1|A|C|157
7OIE|1|A|A|158
7OIE|1|A|A|159
*
7OIE|1|A|U|171
7OIE|1|A|A|172
7OIE|1|A|U|173
7OIE|1|A|A|174
7OIE|1|A|C|175
*
7OIE|1|A|G|188
7OIE|1|A|A|189
7OIE|1|A|A|190
*
7OIE|1|A|U|635
7OIE|1|A|A|636
*
7OIE|1|A|U|1010
7OIE|1|A|G|1011
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 0
- 39S ribosomal protein L32, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain K
- 39S ribosomal protein L13, mitochondrial
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
- Chain a
- 39S ribosomal protein L42, mitochondrial
- Chain b
- 39S ribosomal protein L43, mitochondrial
Coloring options: