J5_7OOD_004

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAAAUUAA*UG*CC*GUGAAGAAC*GAC

Length

25 nucleotides

Bulged bases

7OOD|1|3|G|1765, 7OOD|1|3|A|1770

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7OOD_004 not in the Motif Atlas

Homologous match to J5_7A0S_005

Geometric discrepancy: 0.1311

The information below is about J5_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

7OOD|1|3|G|1708
7OOD|1|3|C|1709
7OOD|1|3|A|1710
7OOD|1|3|A|1711
7OOD|1|3|A|1712
7OOD|1|3|U|1713
7OOD|1|3|U|1714
7OOD|1|3|A|1715
7OOD|1|3|A|1716
*
7OOD|1|3|U|1740
7OOD|1|3|G|1741
*
7OOD|1|3|C|1758
7OOD|1|3|C|1759
*
7OOD|1|3|G|1763
7OOD|1|3|U|1764
7OOD|1|3|G|1765
7OOD|1|3|A|1766
7OOD|1|3|A|1767
7OOD|1|3|G|1768
7OOD|1|3|A|1769
7OOD|1|3|A|1770
7OOD|1|3|C|1771
*
7OOD|1|3|G|1995
7OOD|1|3|A|1996
7OOD|1|3|C|1997

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19