J5_7OPE_007
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7OPE|1|A|U|2105, 7OPE|1|A|G|2457, 7OPE|1|A|G|2458, 7OPE|1|A|A|2459, 7OPE|1|A|U|2460
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OPE_007 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0893
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OPE|1|A|U|2103
7OPE|1|A|U|2104
7OPE|1|A|U|2105
7OPE|1|A|A|2106
*
7OPE|1|A|U|2272
7OPE|1|A|U|2273
7OPE|1|A|U|2274
7OPE|1|A|G|2275
*
7OPE|1|A|C|2287
7OPE|1|A|G|2288
*
7OPE|1|A|C|2310
7OPE|1|A|G|2311
*
7OPE|1|A|C|2456
7OPE|1|A|G|2457
7OPE|1|A|G|2458
7OPE|1|A|A|2459
7OPE|1|A|U|2460
7OPE|1|A|A|2461
7OPE|1|A|A|2462
7OPE|1|A|A|2463
7OPE|1|A|A|2464
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L2
- Chain P
- 50S ribosomal protein L15
- Chain a
- 50S ribosomal protein L27
- Chain b
- 50S ribosomal protein L28
- Chain i
- 50S ribosomal protein L35
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