J5_7OSA_002
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7OSA|1|18S|A|93, 7OSA|1|18S|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OSA_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0633
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7OSA|1|18S|C|54
7OSA|1|18S|A|55
7OSA|1|18S|U|56
7OSA|1|18S|G|57
*
7OSA|1|18S|C|90
7OSA|1|18S|G|91
7OSA|1|18S|A|92
7OSA|1|18S|A|93
7OSA|1|18S|U|94
7OSA|1|18S|G|95
7OSA|1|18S|G|96
7OSA|1|18S|C|97
*
7OSA|1|18S|G|386
7OSA|1|18S|A|387
7OSA|1|18S|G|388
*
7OSA|1|18S|C|409
7OSA|1|18S|A|410
7OSA|1|18S|C|411
*
7OSA|1|18S|G|422
7OSA|1|18S|G|423
7OSA|1|18S|C|424
7OSA|1|18S|A|425
7OSA|1|18S|G|426
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain eS24
- 40S ribosomal protein S24
- Chain eS4
- 40S ribosomal protein S4
- Chain eS6
- 40S ribosomal protein S6
- Chain eS8
- 40S ribosomal protein S8
- Chain uL14
- 60S ribosomal protein L23-B
- Chain uS4
- BJ4_G0026100.mRNA.1.CDS.1
Coloring options: