J5_7OSA_005
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 7OSA|1|25S|U|719, 7OSA|1|25S|A|784, 7OSA|1|25S|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OSA_005 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0748
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7OSA|1|25S|C|675
7OSA|1|25S|G|676
7OSA|1|25S|A|677
7OSA|1|25S|G|678
*
7OSA|1|25S|C|702
7OSA|1|25S|G|703
7OSA|1|25S|U|704
7OSA|1|25S|A|705
7OSA|1|25S|A|706
*
7OSA|1|25S|U|713
7OSA|1|25S|G|714
7OSA|1|25S|A|715
7OSA|1|25S|A|716
7OSA|1|25S|C|717
7OSA|1|25S|G|718
7OSA|1|25S|U|719
7OSA|1|25S|A|720
7OSA|1|25S|G|721
*
7OSA|1|25S|C|749
7OSA|1|25S|G|750
7OSA|1|25S|A|751
*
7OSA|1|25S|U|782
7OSA|1|25S|A|783
7OSA|1|25S|A|784
7OSA|1|25S|G|785
7OSA|1|25S|A|786
7OSA|1|25S|G|787
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain eL13
- 60S ribosomal protein L13
- Chain eL18
- BJ4_G0033900.mRNA.1.CDS.1
- Chain eL29
- 60S ribosomal protein L29
- Chain eL36
- 60S ribosomal protein L36-A
- Chain uL15
- 60S ribosomal protein L28
- Chain uL4
- BJ4_G0008850.mRNA.1.CDS.1
Coloring options: