J5_7OSM_002

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

7OSM|1|18S|A|93, 7OSM|1|18S|C|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7OSM_002 not in the Motif Atlas

Homologous match to J5_8C3A_020

Geometric discrepancy: 0.0656

The information below is about J5_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.4

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7OSM|1|18S|C|54
7OSM|1|18S|A|55
7OSM|1|18S|U|56
7OSM|1|18S|G|57
*
7OSM|1|18S|C|90
7OSM|1|18S|G|91
7OSM|1|18S|A|92
7OSM|1|18S|A|93
7OSM|1|18S|U|94
7OSM|1|18S|G|95
7OSM|1|18S|G|96
7OSM|1|18S|C|97
*
7OSM|1|18S|G|386
7OSM|1|18S|A|387
7OSM|1|18S|G|388
*
7OSM|1|18S|C|409
7OSM|1|18S|A|410
7OSM|1|18S|C|411
*
7OSM|1|18S|G|422
7OSM|1|18S|G|423
7OSM|1|18S|C|424
7OSM|1|18S|A|425
7OSM|1|18S|G|426

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS24

40S ribosomal protein S24

Chain eS4

40S ribosomal protein S4

Chain eS6

40S ribosomal protein S6

Chain eS8

40S ribosomal protein S8

Chain uL14

60S ribosomal protein L23-B

Chain uS4

BJ4_G0026100.mRNA.1.CDS.1