J5_7OSM_004
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 7OSM|1|58S|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OSM_004 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0743
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7OSM|1|25S|A|20
7OSM|1|25S|G|21
7OSM|1|25S|G|22
*
7OSM|1|58S|C|35
7OSM|1|58S|G|36
7OSM|1|58S|A|37
7OSM|1|58S|U|38
7OSM|1|58S|G|39
7OSM|1|58S|A|40
7OSM|1|58S|A|41
7OSM|1|58S|G|42
*
7OSM|1|58S|U|102
7OSM|1|58S|G|103
7OSM|1|58S|A|104
7OSM|1|58S|A|105
7OSM|1|58S|C|106
7OSM|1|58S|G|107
*
7OSM|1|58S|C|115
7OSM|1|58S|G|116
*
7OSM|1|58S|C|137
7OSM|1|58S|A|138
7OSM|1|58S|U|139
Current chains
- Chain 25S
- 25S rRNA
- Chain 58S
- 5.8S rRNA
Nearby chains
- Chain eL15
- 60S ribosomal protein L15-A
- Chain eL37
- Ribosomal protein L37
- Chain uL23
- 60S ribosomal protein L25
- Chain uL29
- BJ4_G0044250.mRNA.1.CDS.1
Coloring options: