J5_7P7Q_005
3D structure
- PDB id
- 7P7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7P7Q|1|A|G|1771, 7P7Q|1|A|G|1776
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7P7Q_005 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.0862
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
7P7Q|1|A|G|1716
7P7Q|1|A|C|1717
7P7Q|1|A|A|1718
7P7Q|1|A|A|1719
7P7Q|1|A|A|1720
7P7Q|1|A|A|1721
7P7Q|1|A|U|1722
7P7Q|1|A|G|1723
7P7Q|1|A|A|1724
*
7P7Q|1|A|U|1748
7P7Q|1|A|G|1749
*
7P7Q|1|A|C|1764
7P7Q|1|A|C|1765
*
7P7Q|1|A|G|1769
7P7Q|1|A|U|1770
7P7Q|1|A|G|1771
7P7Q|1|A|A|1772
7P7Q|1|A|A|1773
7P7Q|1|A|U|1774
7P7Q|1|A|A|1775
7P7Q|1|A|G|1776
7P7Q|1|A|G|1777
*
7P7Q|1|A|C|2001
7P7Q|1|A|A|2002
7P7Q|1|A|C|2003
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain H
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L14
- Chain S
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: