J5_7P7U_007
3D structure
- PDB id
- 7P7U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. faecalis 70S ribosome with P-tRNA, state IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7P7U|1|A|U|2089, 7P7U|1|A|G|2441, 7P7U|1|A|G|2442, 7P7U|1|A|A|2443, 7P7U|1|A|U|2444
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7P7U_007 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0726
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7P7U|1|A|U|2087
7P7U|1|A|U|2088
7P7U|1|A|U|2089
7P7U|1|A|A|2090
*
7P7U|1|A|U|2256
7P7U|1|A|U|2257
7P7U|1|A|U|2258
7P7U|1|A|G|2259
*
7P7U|1|A|C|2271
7P7U|1|A|G|2272
*
7P7U|1|A|C|2294
7P7U|1|A|G|2295
*
7P7U|1|A|C|2440
7P7U|1|A|G|2441
7P7U|1|A|G|2442
7P7U|1|A|A|2443
7P7U|1|A|U|2444
7P7U|1|A|A|2445
7P7U|1|A|A|2446
7P7U|1|A|A|2447
7P7U|1|A|A|2448
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain G
- 50S ribosomal protein L2
- Chain O
- 50S ribosomal protein L15
- Chain Y
- 50S ribosomal protein L27
- Chain Z
- 50S ribosomal protein L28
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