J5_7PWO_007
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CAUG*CGGACGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7PWO|1|2|U|55, 7PWO|1|2|A|80, 7PWO|1|2|C|336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7PWO_007 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1442
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7PWO|1|2|C|53
7PWO|1|2|A|54
7PWO|1|2|U|55
7PWO|1|2|G|56
*
7PWO|1|2|C|77
7PWO|1|2|G|78
7PWO|1|2|G|79
7PWO|1|2|A|80
7PWO|1|2|C|81
7PWO|1|2|G|82
7PWO|1|2|G|83
7PWO|1|2|C|84
*
7PWO|1|2|G|298
7PWO|1|2|A|299
7PWO|1|2|G|300
*
7PWO|1|2|C|321
7PWO|1|2|A|322
7PWO|1|2|C|323
*
7PWO|1|2|G|334
7PWO|1|2|G|335
7PWO|1|2|C|336
7PWO|1|2|A|337
7PWO|1|2|G|338
Current chains
- Chain 2
- rRNA 18S
Nearby chains
- Chain E1
- 40S ribosomal protein S4
- Chain G1
- 40S ribosomal protein S6
- Chain I1
- 40S ribosomal protein S8
- Chain J1
- Ribosomal protein S9
- Chain V2
- Ribosomal protein L23
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