J5_7QCA_002
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- GCAAAAUGG*UG*UC*GUGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7QCA|1|L50|G|1568, 7QCA|1|L50|G|1573
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7QCA_002 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.1114
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
7QCA|1|L50|G|1513
7QCA|1|L50|C|1514
7QCA|1|L50|A|1515
7QCA|1|L50|A|1516
7QCA|1|L50|A|1517
7QCA|1|L50|A|1518
7QCA|1|L50|U|1519
7QCA|1|L50|G|1520
7QCA|1|L50|G|1521
*
7QCA|1|L50|U|1545
7QCA|1|L50|G|1546
*
7QCA|1|L50|U|1561
7QCA|1|L50|C|1562
*
7QCA|1|L50|G|1566
7QCA|1|L50|U|1567
7QCA|1|L50|G|1568
7QCA|1|L50|A|1569
7QCA|1|L50|C|1570
7QCA|1|L50|A|1571
7QCA|1|L50|A|1572
7QCA|1|L50|G|1573
7QCA|1|L50|G|1574
*
7QCA|1|L50|C|1767
7QCA|1|L50|A|1768
7QCA|1|L50|C|1769
Current chains
- Chain L50
- RNA 23S
Nearby chains
- Chain LB0
- 60S ribosomal protein L3
- Chain LR0
- 60S ribosomal protein L19
- Chain LV0
- Ribosomal protein L23
- Chain LW0
- Ribosomal protein L24E
- Chain S60
- Small subunit ribosomal RNA; SSU rRNA
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