3D structure

PDB id
7QG8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the collided E. coli disome - VemP-stalled 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.97 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
7QG8|1|N|U|1758, 7QG8|1|N|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7QG8_007 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.06
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7QG8|1|N|G|1674
7QG8|1|N|C|1675
7QG8|1|N|A|1676
7QG8|1|N|A|1677
7QG8|1|N|A|1678
7QG8|1|N|A|1679
7QG8|1|N|U|1680
7QG8|1|N|G|1681
7QG8|1|N|G|1682
*
7QG8|1|N|C|1706
7QG8|1|N|G|1707
*
7QG8|1|N|U|1751
7QG8|1|N|C|1752
*
7QG8|1|N|G|1756
7QG8|1|N|A|1757
7QG8|1|N|U|1758
7QG8|1|N|A|1759
7QG8|1|N|C|1760
7QG8|1|N|C|1761
7QG8|1|N|A|1762
7QG8|1|N|G|1763
7QG8|1|N|C|1764
*
7QG8|1|N|G|1988
7QG8|1|N|G|1989
7QG8|1|N|C|1990

Current chains

Chain N
23S rRNA

Nearby chains

Chain Q
50S ribosomal protein L3
Chain X
50S ribosomal protein L14
Chain c
50S ribosomal protein L19

Coloring options:


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