J5_7QGR_007

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7QGR|1|N|U|1758, 7QGR|1|N|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7QGR_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0601

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7QGR|1|N|G|1674
7QGR|1|N|C|1675
7QGR|1|N|A|1676
7QGR|1|N|A|1677
7QGR|1|N|A|1678
7QGR|1|N|A|1679
7QGR|1|N|U|1680
7QGR|1|N|G|1681
7QGR|1|N|G|1682
*
7QGR|1|N|C|1706
7QGR|1|N|G|1707
*
7QGR|1|N|U|1751
7QGR|1|N|C|1752
*
7QGR|1|N|G|1756
7QGR|1|N|A|1757
7QGR|1|N|U|1758
7QGR|1|N|A|1759
7QGR|1|N|C|1760
7QGR|1|N|C|1761
7QGR|1|N|A|1762
7QGR|1|N|G|1763
7QGR|1|N|C|1764
*
7QGR|1|N|G|1988
7QGR|1|N|G|1989
7QGR|1|N|C|1990

Current chains

Chain N

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain X

50S ribosomal protein L14

Chain c

50S ribosomal protein L19