J5_7QGU_001

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

7QGU|1|A|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7QGU_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1536

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.2

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7QGU|1|A|C|47
7QGU|1|A|G|48
7QGU|1|A|A|49
7QGU|1|A|U|50
7QGU|1|A|G|51
7QGU|1|A|A|52
7QGU|1|A|A|53
7QGU|1|A|G|54
*
7QGU|1|A|C|115
7QGU|1|A|G|116
7QGU|1|A|A|117
7QGU|1|A|A|118
7QGU|1|A|U|119
7QGU|1|A|G|120
*
7QGU|1|A|C|129
7QGU|1|A|A|130
*
7QGU|1|A|U|149
7QGU|1|A|A|150
7QGU|1|A|U|151
*
7QGU|1|A|A|178
7QGU|1|A|A|179
7QGU|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34