J5_7QIZ_009
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7QIZ|1|S2|A|94, 7QIZ|1|S2|C|428
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7QIZ_009 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0709
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|S2|C|54
7QIZ|1|S2|A|55
7QIZ|1|S2|U|56
7QIZ|1|S2|G|57
*
7QIZ|1|S2|C|91
7QIZ|1|S2|G|92
7QIZ|1|S2|A|93
7QIZ|1|S2|A|94
7QIZ|1|S2|U|95
7QIZ|1|S2|G|96
7QIZ|1|S2|G|97
7QIZ|1|S2|C|98
*
7QIZ|1|S2|G|390
7QIZ|1|S2|A|391
7QIZ|1|S2|OMG|392
*
7QIZ|1|S2|C|413
7QIZ|1|S2|A|414
7QIZ|1|S2|C|415
*
7QIZ|1|S2|G|426
7QIZ|1|S2|G|427
7QIZ|1|S2|C|428
7QIZ|1|S2|A|429
7QIZ|1|S2|G|430
Current chains
- Chain S2
- 18S
Nearby chains
- Chain FA
- 40S ribosomal protein S6
- Chain GA
- 40S body ribosomal protein uS4
- Chain KA
- 40S ribosomal protein S24
- Chain X
- 60S ribosomal protein uL14
- Chain w
- 40S ribosomal protein S4
- Chain y
- 40S ribosomal protein S8
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