J5_7QVP_014
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7QVP|1|S3|A|92, 7QVP|1|S3|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7QVP_014 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0692
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7QVP|1|S3|C|53
7QVP|1|S3|A|54
7QVP|1|S3|U|55
7QVP|1|S3|G|56
*
7QVP|1|S3|C|89
7QVP|1|S3|G|90
7QVP|1|S3|A|91
7QVP|1|S3|A|92
7QVP|1|S3|U|93
7QVP|1|S3|G|94
7QVP|1|S3|G|95
7QVP|1|S3|C|96
*
7QVP|1|S3|G|434
7QVP|1|S3|A|435
7QVP|1|S3|G|436
*
7QVP|1|S3|C|457
7QVP|1|S3|A|458
7QVP|1|S3|C|459
*
7QVP|1|S3|G|470
7QVP|1|S3|G|471
7QVP|1|S3|C|472
7QVP|1|S3|A|473
7QVP|1|S3|G|474
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain MV
- 60S ribosomal protein L23
- Chain RE
- 40S ribosomal protein S4, X isoform
- Chain RG
- 40S ribosomal protein S6
- Chain RI
- 40S ribosomal protein S8
- Chain RJ
- 40S ribosomal protein S9
- Chain RY
- 40S ribosomal protein S24
Coloring options: