J5_7R4X_001

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

26 nucleotides

Bulged bases

7R4X|1|2|C|593

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7R4X_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0814

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7R4X|1|2|C|30
7R4X|1|2|U|31
7R4X|1|2|U|32
7R4X|1|2|G|33
7R4X|1|2|U|34
*
7R4X|1|2|A|521
7R4X|1|2|A|522
7R4X|1|2|A|523
7R4X|1|2|U|524
7R4X|1|2|A|525
7R4X|1|2|A|526
7R4X|1|2|C|527
*
7R4X|1|2|G|558
7R4X|1|2|G|559
7R4X|1|2|A|560
7R4X|1|2|A|561
7R4X|1|2|U|562
7R4X|1|2|G|563
*
7R4X|1|2|C|592
7R4X|1|2|C|593
7R4X|1|2|A|594
7R4X|1|2|U|595
*
7R4X|1|2|A|641
7R4X|1|2|U|642
7R4X|1|2|A|643
7R4X|1|2|OMG|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30