J5_7S0S_006

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GCAAAAUGC*GA*UG*CAAACCAGU*AAC

Length

25 nucleotides

Bulged bases

7S0S|1|C|A|1975, 7S0S|1|C|G|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7S0S_006 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0887

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7S0S|1|C|G|1892
7S0S|1|C|C|1893
7S0S|1|C|A|1894
7S0S|1|C|A|1895
7S0S|1|C|A|1896
7S0S|1|C|A|1897
7S0S|1|C|U|1898
7S0S|1|C|G|1899
7S0S|1|C|C|1900
*
7S0S|1|C|G|1924
7S0S|1|C|A|1925
*
7S0S|1|C|U|1968
7S0S|1|C|G|1969
*
7S0S|1|C|C|1973
7S0S|1|C|A|1974
7S0S|1|C|A|1975
7S0S|1|C|A|1976
7S0S|1|C|C|1977
7S0S|1|C|C|1978
7S0S|1|C|A|1979
7S0S|1|C|G|1980
7S0S|1|C|U|1981
*
7S0S|1|C|A|2212
7S0S|1|C|A|2213
7S0S|1|C|C|2214

Current chains

Chain C

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain M

50S ribosomal protein L14

Chain R

50S ribosomal protein L19