J5_7S9U_004

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

7S9U|1|A|G|1787, 7S9U|1|A|G|1792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7S9U_004 not in the Motif Atlas

Homologous match to J5_4WF9_005

Geometric discrepancy: 0.1447

The information below is about J5_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.2

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

11

Unit IDs

7S9U|1|A|G|1719
7S9U|1|A|C|1720
7S9U|1|A|A|1721
7S9U|1|A|A|1722
7S9U|1|A|A|1723
7S9U|1|A|A|1724
7S9U|1|A|U|1725
7S9U|1|A|G|1726
7S9U|1|A|A|1727
*
7S9U|1|A|U|1751
7S9U|1|A|G|1752
*
7S9U|1|A|C|1780
7S9U|1|A|C|1781
*
7S9U|1|A|G|1785
7S9U|1|A|U|1786
7S9U|1|A|G|1787
7S9U|1|A|A|1788
7S9U|1|A|A|1789
7S9U|1|A|U|1790
7S9U|1|A|A|1791
7S9U|1|A|G|1792
7S9U|1|A|G|1793
*
7S9U|1|A|C|2017
7S9U|1|A|A|2018
7S9U|1|A|C|2019

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19