J5_7SAE_007

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

7SAE|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7SAE_007 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.0938

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7SAE|1|A|C|47
7SAE|1|A|G|48
7SAE|1|A|A|49
7SAE|1|A|U|50
7SAE|1|A|G|51
7SAE|1|A|A|52
7SAE|1|A|A|53
7SAE|1|A|G|54
*
7SAE|1|A|C|115
7SAE|1|A|G|116
7SAE|1|A|A|117
7SAE|1|A|A|118
7SAE|1|A|U|119
7SAE|1|A|G|120
*
7SAE|1|A|C|129
7SAE|1|A|A|130
*
7SAE|1|A|U|149
7SAE|1|A|A|150
7SAE|1|A|U|151
*
7SAE|1|A|A|178
7SAE|1|A|A|179
7SAE|1|A|G|180

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34