J5_7SSL_010
3D structure
- PDB id
- 7SSL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7SSL|1|3|A|109, 7SSL|1|3|C|352, 7SSL|1|3|A|353
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7SSL_010 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1226
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7SSL|1|3|C|58
7SSL|1|3|A|59
7SSL|1|3|A|60
7SSL|1|3|G|61
*
7SSL|1|3|C|106
7SSL|1|3|G|107
7SSL|1|3|G|108
7SSL|1|3|A|109
7SSL|1|3|C|110
7SSL|1|3|G|111
7SSL|1|3|G|112
7SSL|1|3|G|113
*
7SSL|1|3|C|314
7SSL|1|3|A|315
7SSL|1|3|C|316
*
7SSL|1|3|G|337
7SSL|1|3|A|338
7SSL|1|3|C|339
*
7SSL|1|3|G|350
7SSL|1|3|G|351
7SSL|1|3|C|352
7SSL|1|3|A|353
7SSL|1|3|G|354
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 8
- Elongation factor G
- Chain U
- 30S ribosomal protein S16
- Chain Y
- 30S ribosomal protein S20
- Chain k
- 50S ribosomal protein L14
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