J5_7SYQ_001

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAUU*AAUAG

Length

28 nucleotides

Bulged bases

7SYQ|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7SYQ_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.5131

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7SYQ|1|2|C|30
7SYQ|1|2|U|31
7SYQ|1|2|U|32
7SYQ|1|2|G|33
7SYQ|1|2|U|34
*
7SYQ|1|2|A|521
7SYQ|1|2|A|522
7SYQ|1|2|A|523
7SYQ|1|2|U|524
7SYQ|1|2|A|525
7SYQ|1|2|A|526
7SYQ|1|2|C|527
*
7SYQ|1|2|G|558
7SYQ|1|2|G|559
7SYQ|1|2|A|560
7SYQ|1|2|A|561
7SYQ|1|2|U|562
7SYQ|1|2|G|563
*
7SYQ|1|2|C|592
7SYQ|1|2|C|593
7SYQ|1|2|A|594
7SYQ|1|2|U|595
7SYQ|1|2|U|596
*
7SYQ|1|2|A|640
7SYQ|1|2|A|641
7SYQ|1|2|U|642
7SYQ|1|2|A|643
7SYQ|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30