J5_7SYT_001

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

7SYT|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7SYT_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1348

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7SYT|1|2|C|30
7SYT|1|2|U|31
7SYT|1|2|U|32
7SYT|1|2|G|33
7SYT|1|2|U|34
*
7SYT|1|2|A|521
7SYT|1|2|A|522
7SYT|1|2|A|523
7SYT|1|2|U|524
7SYT|1|2|A|525
7SYT|1|2|A|526
7SYT|1|2|C|527
*
7SYT|1|2|G|558
7SYT|1|2|G|559
7SYT|1|2|A|560
7SYT|1|2|A|561
7SYT|1|2|U|562
7SYT|1|2|G|563
*
7SYT|1|2|C|592
7SYT|1|2|C|593
7SYT|1|2|A|594
7SYT|1|2|U|595
*
7SYT|1|2|A|641
7SYT|1|2|U|642
7SYT|1|2|A|643
7SYT|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30