J5_7SYU_001

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

7SYU|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7SYU_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1191

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7SYU|1|2|C|30
7SYU|1|2|U|31
7SYU|1|2|U|32
7SYU|1|2|G|33
7SYU|1|2|U|34
*
7SYU|1|2|A|521
7SYU|1|2|A|522
7SYU|1|2|A|523
7SYU|1|2|U|524
7SYU|1|2|A|525
7SYU|1|2|A|526
7SYU|1|2|C|527
*
7SYU|1|2|G|558
7SYU|1|2|G|559
7SYU|1|2|A|560
7SYU|1|2|A|561
7SYU|1|2|U|562
7SYU|1|2|G|563
*
7SYU|1|2|C|592
7SYU|1|2|C|593
7SYU|1|2|A|594
7SYU|1|2|U|595
*
7SYU|1|2|A|641
7SYU|1|2|U|642
7SYU|1|2|A|643
7SYU|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30