J5_7TOQ_007

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGUC*GGAC*GUUC*GCC*GCAGAUC

Length

24 nucleotides

Bulged bases

7TOQ|1|A25S|C|2289, 7TOQ|1|A25S|U|2350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7TOQ_007 not in the Motif Atlas

Homologous match to J5_8C3A_002

Geometric discrepancy: 0.1713

The information below is about J5_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOQ|1|A25S|G|1335
7TOQ|1|A25S|G|1336
7TOQ|1|A25S|A|1337
7TOQ|1|A25S|G|1338
7TOQ|1|A25S|U|1339
7TOQ|1|A25S|C|1340
*
7TOQ|1|A25S|G|1516
7TOQ|1|A25S|G|1517
7TOQ|1|A25S|A|1518
7TOQ|1|A25S|C|1519
*
7TOQ|1|A25S|G|1658
7TOQ|1|A25S|U|1659
7TOQ|1|A25S|U|1660
7TOQ|1|A25S|C|1661
*
7TOQ|1|A25S|G|2288
7TOQ|1|A25S|C|2289
7TOQ|1|A25S|C|2290
*
7TOQ|1|A25S|G|2345
7TOQ|1|A25S|C|2346
7TOQ|1|A25S|A|2347
7TOQ|1|A25S|G|2348
7TOQ|1|A25S|A|2349
7TOQ|1|A25S|U|2350
7TOQ|1|A25S|C|2351

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL04

60S ribosomal protein L4

Chain AL13

eL13

Chain AL15

60S ribosomal protein L15

Chain AL28

60S ribosomal protein L27a

Chain AL32

60S ribosomal protein L32

Chain EL28

60S ribosomal protein L28